Thus I think I have fully answered all your objections against my second corollary. I therefore proceed to a third.
III. That the civil authority ought to protect all their subjects in the enjoyment of this right of private judgment in matters of religion, and the liberty of worshipping GOD according to their consciences. That being the end of civil government (as we have seen) viz. the greater security of enjoyment of what belongs to every one, and this right of private judgment, and worshipping GOD according to their consciences, being the natural and unalienable right of every man, what men by entering into civil society neither did, nor could give up into the hands of the community; it is but a just consequence, that they are to be protected in the enjoyment of this right as well as any other. A worshipping assembly of Christians have surely as much right to be protected from molestation in their worship, as the inhabitants of a town assembled to consult their civil interests from disturbance &c. This right I am speaking of, is the most valuable right, of which every one ought to be most tender, of universal and equal concernment to all; and security and protection in the enjoyment of it the just expectation of every individual. And the civil magistrate in endeavouring and doing this, most truly comes up to the character of a nursing father to the church of CHRIST. If this had been protected as it ought to have been, what infinite mischief to the Christian church had been prevented? From the want of a due care of this, the clergy through pride and ambition assumed the power of prescribing to, imposing on and domineering over the consciences of men; civil rulers for their own private ends helping it forward; which went on ’till it produced the most detestable monster the earth ever had upon it, the pope, who has deluged the earth with the blood of Christians. This being the true spirit of popery, to impose their determinations on all within their power by any methods which may appear most effectual: and those civil magistrates that suffered and helped that beast to invade this right, did therein commit fornication with her, and give her their strength and power; and so instead of proving fathers to their people, proved the cursed butchers of them. It has been by asserting and using this right, that any of the nations who have been drunk with the Wine of her Fornication, have come out from her Abominations: and would the civil magistrates of those nations, who at this day worship the beast, but protect their subjects in this natural right of every one’s judging for himself in matters of religion, according to that alone rule the Bible; that settled darkness of ignorance, error & idolatry, which now involves them, would vanish as the darkness of the night does by the rising of the sun. How unspeakable would the advantages be, arising from the protection of this right, did they reach no further than to the estates, bodies, and lives of men?
All reformations are built on this single principle I have been pleading for, from which we should never depart: yet it must be owned and deserves to be lamented, that the reformed have too much departed from this principle upon which they at first set up; whence it has come to pass that reformations in one place and another have not been more perfect. For the Prince of Darkness has always found means this way to make a stand against the most vigorous efforts; and if any advantages have been gained in any point, to secure a safe retreat, by infatuating men with that strange sort of pride, whereby they assume to themselves only, but allow to none else, a power of domineering over the consciences of others. Religion will certainly lie under oppression if this unjust authority be transferred, to decrees of councils, convocations, injunctions of civil magistrates, or from one man or any order of men to another; as it is if we have any other rule of faith and practice in religion, besides the Bible. It were easy to enlarge on the vast advantages and happiness of admitting no other rule or guide but the sacred scriptures only: thence would flow the greatest blessings to mankind, peace and happiness to the world: so that if there be any rights and liberties of men that challenge protection and security therein from the civil magistrate, it is this natural right of private judgment in matters of religion, that the sacred scriptures only may become the rule to all men in all religious matters, as they ought to be. In a word, this is the surest way for the ease and quiet of rulers, as well as peace of the state, the surest way to engage the love and obedience of all the subjects. And if there be divers religious sects in the state, and the one attempts to offend the other, and the magistrate interposes only to keep the peace; it is but a natural consequence to suppose that in such case they all finding themselves equally safe, and protected in their rights by the civil power, they will all be equally obedient. It is the power given to one, to oppress the other, that has occasioned all the disturbances about religion. And should the clergy closely adhere to these principles, instead of their being reproached for pride and ambition, as the sowers of strife and contention and disturbance of the peace of the church of God; they would be honoured for their work’s sake, esteemed for their character, loved as blessings to the world, heard with pleasure, and become successful in their endeavours to recommend the knowledge and practice of Christianity.
IV. It also follows from the preceeding principles, that every Christian has right to determine for himself what church to join himself to; and every church has right to judge in what manner GOD is to be worshipped by them, and what form of discipline ought to be observed by them, and the right also of electing their own officers.